WebThe ChIA-PET Tool V3 is a computational package for processing the DNA sequence data generated from the ChIA-PET experimental method, and it consists of 7 steps ( Figure 3): (1) linker filtering ... WebChromatin Interaction Analysis with Updated ChIA-PET Tool (V3) Author: Guoliang Li, Tongkai Sun, Huidan Chang, Liuyang Cai, Ping Hong, Qiangwei Zhou Source: Genes …
ChIA-PET2 workflow. Linkers are first trimmed for each pair of …
WebMar 10, 2024 · The ChIA-PET tool was the first package designed for ChIA-PET data processing. Since the DNA construct of DLO Hi-C data is similar to that of the short reads in ChIA-PET data, the linker reads were recognized and filtered with a modified ChIA-PET tool . However, the following steps in the ChIA-PET tool are not suitable for DLO Hi-C … WebDec 14, 2024 · Using different ChIA-PET datasets, we evaluated the performance of ChIAMM and compared it with the existing methods, including ChIA-PET Tool, ChiaSig, Mango, ChIA-PET2, and ChIAPoP. The result showed that the new approach performed better than most top existing methods in detecting significant chromatin interactions in … the long paddock menu
ChIA-PET - Illumina
WebChIA-PET features an immunoprecipitation step to map long-range DNA interactions, similar to Hi-C 1. In this method, DNA-protein complexes are crosslinked and fragmented. Specific antibodies are used to immunoprecipitate proteins of interest. Two sets of linkers, with unique barcodes, are ligated to the ends of the DNA fragments in separate ... WebService & Technical Information. An introduction of ASB services and technological strengths that respond to the needs of our customers. Service From design consultation … WebChIA-PET_Tool_V3 / ChIA-PET_Report / index.html Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. Cannot retrieve contributors at this time. the long pass